FastQCFastQC Report
Wed 8 May 2024
EGAF00007959890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458880
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT20380.44412482566248257No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT18260.39792538354253837No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18250.3977074616457462No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC18120.3948744769874477No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG17320.3774407252440725No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15650.3410477684797768No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15280.33298465829846585No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15230.3318950488145049No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10360.2257670850767085No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9790.21334553695955372No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9690.21116631799163182No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9530.20767956764295675No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8040.17520920502092052No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8000.17433751743375175No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7950.17324790794979078No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7150.15581415620641562No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6980.1521094839609484No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6960.151673640167364No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG6670.1453539051603905No Hit
CGGAGTTTTGCCGTTCACCGTTTTTACCAGACCGGTCAGCGCAA6300.13729079497907948No Hit
TTTGTTTGGCTGGCTAACGGAAGAAGAATCTTCGGTGGTTTCAA6300.13729079497907948No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT6210.1353294979079498No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5940.12944560669456068No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5900.1285739191073919No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5890.1283559972105997No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG5880.12813807531380753No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5660.12334379358437936No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5540.12072873082287308No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT5340.1163702928870293No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5310.11571652719665271No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5270.11484483960948397No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5180.11288354253835425No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT5120.11157601115760112No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5100.11114016736401675No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5030.1096147140864714No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4910.10699965132496513No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT4760.10373082287308229No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4700.10242329149232915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)