FastQCFastQC Report
Wed 8 May 2024
EGAF00007959891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458880
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39880.8690725244072525No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20920.4558926080892608No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC18050.3933490237099024No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC18000.3922594142259414No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG16830.36676255230125526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15260.3325488145048815No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC15030.3275366108786611No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10710.23339435146443516No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9980.21748605299860532No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9900.2157426778242678No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9730.21203800557880056No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9640.21007670850767085No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9310.20288528591352858No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.1985268479776848No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8660.18872036262203626No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8610.1876307531380753No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8040.17520920502092052No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC7360.1603905160390516No Hit
CTGCACCAGCCGCCGCCGGTGCCGAAACCGG7050.15363493723849372No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7020.15298117154811716No Hit
GACGAAAACGGCAACGTGCAGGTCGATGGTG7000.15254532775453278No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6960.151673640167364No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6910.15058403068340306No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6760.14731520223152023No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6340.13816248256624825No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6320.1377266387726639No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG6010.13097105997210598No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5950.12966352859135286No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5830.12704846582984658No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5810.1266126220362622No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5730.1248692468619247No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5500.11985704323570433No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5330.1161523709902371No Hit
GGCCTGCAGTCTTCTTCTTATCCGGGTTACG5220.11375523012552302No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5030.1096147140864714No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5010.10917887029288703No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC4990.10874302649930266No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4890.10656380753138076No Hit
GACAAAGCGGAGGCCCAGTCTACCCCGGAAC4720.10285913528591353No Hit
GGTCTGCAGAGCTCTTCTTACCCGGGTTATG4590.10002615062761507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)