FastQCFastQC Report
Wed 8 May 2024
EGAF00007959892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432290
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19900.46033912419903306No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC17360.4015822711605635No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT17330.400888292581369No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG17160.3969557472992667No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16780.3881653519628027No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14880.344213375280483No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14720.34051215619144554No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13880.32108075597399893No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10490.24266117652501792No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9150.21166346665432928No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8620.1994031784218927No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8080.18691156399639133No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7660.177195863887668No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7330.16956209951652826No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7290.1686367947442689No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6720.15545120173957297No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG6490.15013069929908163No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6430.1487427421406926No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT6250.14457887066552547No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6200.14342223970020127No Hit
TTTGTTTGGCTGGCTAACGGAAGAAGAATCTTCGGTGGTTTCAA5720.13231858243308892No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5690.13162460385389438No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG5590.12931134192324598No Hit
CGGAGTTTTGCCGTTCACCGTTTTTACCAGACCGGTCAGCGCAA5490.12699807999259757No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5410.12514747044807883No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5360.12399083948275463No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5160.11936431562145783No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5140.11890166323532812No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5090.11774503227000392No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5010.11589442272548521No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT4980.11520044414629069No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4930.11404381318096649No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT4840.11196187744338292No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4770.11034259409192904No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4720.10918596312660482No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4470.10340280829998381No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4430.10247750352772443No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT4430.10247750352772443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)