FastQCFastQC Report
Wed 8 May 2024
EGAF00007959893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432290
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40630.9398783224224478No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36370.8413333641768257No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19820.45848851465451435No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17230.3985750306507206No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC16720.3867773948044137No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG16480.3812255661708575No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14340.3317217608549816No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13870.3208494297809341No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9770.2260056906243494No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9710.22461773346596037No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9650.22322977630757132No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9070.20981285710981054No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8900.20588031182770827No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8210.18991880450623422No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7840.18135973536283514No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7750.1792777996252516No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7280.16840546855120406No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC7200.16655485900668532No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7130.16493557565523145No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6360.1471234587892387No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6160.14249693492794188No Hit
CTGCACCAGCCGCCGCCGGTGCCGAAACCGG6030.13948969441809894No Hit
GACGAAAACGGCAACGTGCAGGTCGATGGTG5980.13833306345277474No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5960.13787041106664508No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5870.13578847532906152No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG5870.13578847532906152No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5730.13254990862615373No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5360.12399083948275463No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5260.12167757755210623No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5200.12028962039371718No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5100.11797635846306877No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5100.11797635846306877No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4920.11381248698790164No Hit
GGCCTGCAGTCTTCTTCTTATCCGGGTTACG4850.11219320363644776No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC4640.1073353535820861No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4620.10687270119595642No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4570.10571607023063222No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4550.10525341784450254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)