FastQCFastQC Report
Wed 8 May 2024
EGAF00007959895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465443
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38140.8194343883139289No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21220.4559097461987826No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC18500.39747079663890095No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC18320.39360351321214415No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG17970.3860837954378946No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC16260.34934460288370434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14950.3211993735000849No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10830.23268155284320527No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10200.21914606084955623No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9880.2122708903130996No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9830.21119664491677823No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9720.20883330504487124No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9510.20432147438032155No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9240.19852054924018622No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8440.18133262289904456No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8420.18090292474051603No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8380.18004352842345894No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC7980.1714495652528881No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7380.15855862049703187No Hit
GACGAAAACGGCAACGTGCAGGTCGATGGTG7190.1544764879910107No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6770.14545282666191134No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6770.14545282666191134No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6520.14008159968030456No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6440.13836280704619042No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6310.13556976901575488No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6300.13535491993649063No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6270.13471037269869782No Hit
CTGCACCAGCCGCCGCCGGTGCCGAAACCGG6100.13105793835120522No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6030.1295539947963553No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5990.12869459847929823No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG5930.1274055040037126No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5920.1271906549244483No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5150.11064727582109947No Hit
GGCCTGCAGTCTTCTTCTTATCCGGGTTACG4890.10506119976022843No Hit
GGTCTGCAGAGCTCTTCTTACCCGGGTTATG4870.10463150160169989No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA4860.10441665252243562No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4860.10441665252243562No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC4810.10334240712611426No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4700.10097906725420729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)