FastQCFastQC Report
Wed 8 May 2024
EGAF00007959896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438694
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19350.44108193866339634No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT17850.40688954031739666No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC17720.40392619912741No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG16820.3834107601198101No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16820.3834107601198101No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15480.3528655509307171No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14590.33257806124542394No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14450.3293867707331306No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9690.22088289331515815No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9580.21837545076978487No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8980.204698491431385No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8620.19649231582834506No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8260.18828614022530513No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7590.17301353563075858No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7550.17210173834153192No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6920.15774093103621203No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6910.15751298171390538No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6400.14588756627626545No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6290.14338012373089215No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG6290.14338012373089215No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5970.13608574541707888No Hit
CGGAGTTTTGCCGTTCACCGTTTTTACCAGACCGGTCAGCGCAA5840.13312240422709223No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5700.12993111371479893No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT5650.1287913671032656No Hit
TTTGTTTGGCTGGCTAACGGAAGAAGAATCTTCGGTGGTTTCAA5640.12856341778095895No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5610.12787956981403895No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5470.12468827930174563No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5360.12218083675637231No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5350.12195288743406567No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5320.12126903946714568No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT5000.11397466115333238No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4790.10918772538489244No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4780.10895977606258578No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT4770.10873182674027909No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG4490.1023492457156925No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT4480.10212129639338581No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4450.10143744842646583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)