FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438694
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37570.8564056039061395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36580.8338386209977797No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19550.44564092510952963No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC17540.39982311132589No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17120.3902492397890101No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG16420.37429278722754356No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14470.3298426693777439No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14070.32072469648547736No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10620.24208218028967798No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9530.21723570415825155No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9160.20880157923290496No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8900.20287489685293167No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8850.20173515024139835No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8600.1960364171837317No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8430.1921612787045184No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7910.18030791394457185No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7410.1689104478292386No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC6870.1566011844246787No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6810.1552334884908387No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6680.1522701473008521No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6610.15067450204470542No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6580.14999065407778542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6490.14793911017702543No Hit
GACGAAAACGGCAACGTGCAGGTCGATGGTG6470.14748321153241212No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6310.14383602237550547No Hit
CTGCACCAGCCGCCGCCGGTGCCGAAACCGG6150.14018883321859885No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5940.13540189745015888No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5650.1287913671032656No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5450.1242323806571323No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5430.12377648201251897No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG5430.12377648201251897No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5390.12286468472329233No Hit
GGTCTGCAGAGCTCTTCTTACCCGGGTTATG4640.10576848555029245No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC4590.10462873893875912No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4460.10166539774877248No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4460.10166539774877248No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4450.10143744842646583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)