FastQCFastQC Report
Wed 8 May 2024
EGAF00007959898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431752
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT36280.8402972076562472No Hit
CTGGGAGCGGTTTTCGGCGTCACGTTGGCGGCGTTCCAGAACGT24760.5734773666364024No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA16950.39258648483388614No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14430.33421964461079506No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8090.1873760862717486No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7690.17811150845855955No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6030.13966351053382497No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5530.12808278826733865No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5290.12252404157942522No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5210.12067112601678741No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG4360.10098389816376067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)