FastQCFastQC Report
Wed 8 May 2024
EGAF00007959899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431752
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG40360.9347959013507755No Hit
GGTAATGTTCTGGAACGTCGTCAGCGTGATG25610.5931645944894292No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC19580.4535010839556042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14570.33746224684541126No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8840.20474716967147807No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8510.1971038929755971No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC8020.1857547851544405No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.14012673942448442No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5680.13155700494728456No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5610.12993570382997646No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5190.12020789712612796No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4990.11557560821953343No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4490.10399488595304712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)