FastQCFastQC Report
Wed 8 May 2024
EGAF00007959900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408906
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT33710.8243948486938318No Hit
CTGGGAGCGGTTTTCGGCGTCACGTTGGCGGCGTTCCAGAACGT23610.5773943155639683No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA16600.40596127227284506No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13670.33430666216685495No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7520.1839053474392648No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6830.16703105359177903No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5550.13572801572977652No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5130.12545670643130694No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4990.12203293666515043No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4960.12129927171525975No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4360.10662597271744606No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG4100.10026754315172681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)