FastQCFastQC Report
Wed 8 May 2024
EGAF00007959901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408906
Total Bases12.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39580.9679486238891091No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG37320.9126791976640107No Hit
GGTAATGTTCTGGAACGTCGTCAGCGTGATG24140.5903557296787038No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC18270.44680195448342647No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13260.3242799078516823No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7820.1912419969381716No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7220.17656869794035793No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.13964089546252684No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5260.12863592121416656No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5090.12447848649811938No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4670.11420717719964979No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4550.11127251740008705No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4470.1093160775337119No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4260.10418042288447711No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4200.10271309298469575No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4100.10026754315172681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)