FastQCFastQC Report
Wed 8 May 2024
EGAF00007959902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435466
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT35620.8179743079827128No Hit
CTGGGAGCGGTTTTCGGCGTCACGTTGGCGGCGTTCCAGAACGT24780.569045574166525No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA17600.40416473387130103No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13520.31047200011022674No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8130.1866965503621408No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7400.16993289946861523No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6070.13939090537493168No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5980.13732415389490799No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5830.13387956809486848No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5760.13227209472151674No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4700.10793035506790427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)