FastQCFastQC Report
Wed 31 May 2023
EGAF00007959903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435466
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG39990.9183265742905301No Hit
GGTAATGTTCTGGAACGTCGTCAGCGTGATG26120.5998172073135446No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC20030.45996702383194094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13420.30817560957686707No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8780.2016230888289786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8290.19037077521551626No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7660.17590351485535036No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6330.1453615207616668No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6300.14467260360165893No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5820.1336499290415325No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5570.12790895270813335No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4790.10999710654792796No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4770.10953782844125602No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4580.10517468642787266No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4360.1001226272544814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)