FastQCFastQC Report
Wed 8 May 2024
EGAF00007959904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413370
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT33780.8171855722476232No Hit
CTGGGAGCGGTTTTCGGCGTCACGTTGGCGGCGTTCCAGAACGT23240.5622081912088444No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA16400.3967389989597697No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13860.33529283692575657No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7830.18941868060091444No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7140.1727266129617534No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6160.14901903863366958No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5440.13160122892324067No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5160.12482763625807389No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5080.12289232406802622No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4550.11007088080896049No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG4220.10208771802501392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)