FastQCFastQC Report
Wed 8 May 2024
EGAF00007959905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413370
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG37170.8991944263008927No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35260.8529888477635049No Hit
GGTAATGTTCTGGAACGTCGTCAGCGTGATG24160.5844642813943924No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC18440.44608945980598497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13810.3340832668069768No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8210.1986114135036408No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7340.17756489343687254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.14708372644362194No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5390.13039165880446088No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5390.13039165880446088No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5060.12240849602051432No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4600.11128045092774028No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4590.11103853690398431No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4180.10112006192999007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)