FastQCFastQC Report
Wed 8 May 2024
EGAF00007959906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445861
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14850.3330634435395785No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13840.31041064367594384No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12710.2850664220463328No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12600.2825992854275211No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12360.2772164418955684No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9200.20634233539152336No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8060.18077382861474764No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7880.17673669596578306No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7430.16664386434337158No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7250.162606731694407No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6950.155878177279466No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6770.15184104463050144No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6450.14466391992123104No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6370.14286963874391345No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5780.1296368150611962No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5740.12873967447253742No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5720.128291104178208No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5430.12178683491043173No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5340.11976826858594943No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5260.11797398740863185No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5080.11393685475966724No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4600.10317116769576168No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4530.10160117166560878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)