FastQCFastQC Report
Wed 8 May 2024
EGAF00007959907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445861
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16660.37365905517638903No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16160.3624447978181541No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14830.3326148732452491No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14280.3202791901511906No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14180.3180363386795436No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12900.2893278398424621No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12560.28170214483886236No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9930.22271515113454643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9540.21396803039512316No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8710.1953523631804531No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8710.1953523631804531No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8680.194679507738959No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8200.18391382067505344No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7270.16305530198873638No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7170.16081245051708942No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6630.14870105257019564No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6590.14780391198153686No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6310.14152392786092527No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.13838393580061947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5940.13322537741583138No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.12402968638207872No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5320.11931969829162004No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5120.11483399534832604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4930.11057257755219675No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4810.10788115578622037No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4610.10339545284292638No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4460.10003117563545588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)