FastQCFastQC Report
Wed 8 May 2024
EGAF00007959908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420070
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13800.3285166757921299No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12530.29828361939676723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11860.28233389673149717No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11250.26781250743923635No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11140.265193896255386No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7920.18854000523722236No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7520.17901778275049396No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7160.1704477825124384No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6880.16378222677172852No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6870.1635441712095603No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6750.1606875044635418No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6360.15140333753898158No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6010.14307139286309425No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5850.1392625038684029No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5470.13021639250601091No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5330.12688361463565598No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5260.1252172257004785No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5150.12259861451662818No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5000.11902778108410503No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4690.11164805865689052No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4440.10569666960268526No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4330.10307805841883497No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4330.10307805841883497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)