FastQCFastQC Report
Wed 8 May 2024
EGAF00007959909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420070
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40820.9717428047706334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14970.35636917656581046No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14750.35113195419810983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13750.3273263979812888No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13090.311614730878187No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12870.30637750851048634No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12170.2897136191587117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11910.2835241745423382No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8430.20068083890780108No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8130.19353917204275478No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8060.19187278310757733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7950.189254171923727No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7490.17830361606398934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.15283167091199087No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6400.15235555978765442No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6250.1487847263551313No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6170.1468802818577856No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5760.137120003808889No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5750.13688194824672079No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5280.12569333682481493No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4860.11569500321375009No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4700.11188611421905872No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4700.11188611421905872No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4660.11093389197038589No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4380.104268336229676No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4290.1021258361701621No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG4280.1018877806079939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)