FastQCFastQC Report
Wed 8 May 2024
EGAF00007959910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452007
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15060.33318068083016417No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14390.31835790153692306No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12940.28627875232020744No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12150.26880114688489337No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11400.25220848349693703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9330.20641273254617737No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8260.18274053277935962No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7850.17366987679394347No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7730.17101505065187042No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7600.168138988997958No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6810.15066138356264394No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6570.1453517312784979No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6520.1442455537193008No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5920.13097142300893572No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5870.1298652454497386No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5850.1294227744260598No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5720.12654671277214732No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5680.12566177072478965No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5340.11813976332224943No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5150.1139362885973005No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4990.11039652040786979No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4790.10597181017108141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)