FastQCFastQC Report
Wed 8 May 2024
EGAF00007959911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452007
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16880.3734455439849383No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16780.3712331888665441No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14660.3243312603565874No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14640.3238887893329086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14560.32211890523819325No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13010.28782740090308334No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12690.280747864524222No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9810.21703203711446947No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9310.20597026152249856No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9140.20220925782122842No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8670.19181118876477576No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8650.19136871774109693No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7810.17278493474658577No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG7000.1548648582875929No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6970.15420115175207463No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6950.1537586807283958No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6560.14513049576665848No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.1391571369469942No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6170.13650231080492117No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6140.13583860426940292No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.1201308829288042No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5180.11459999513281874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5150.1139362885973005No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5140.11371505308546107No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5080.11238764001442457No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4820.10663551670659968No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4590.10154709993429306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)