FastQCFastQC Report
Wed 8 May 2024
EGAF00007959912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424182
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13910.3279252773573607No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13310.3137804055806234No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11630.27417476460575885No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11390.26851681589506393No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11000.25932264924018467No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8610.2029789099961809No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7970.18789104676766105No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7660.18058286301634677No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7300.17209593995030434No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7100.1673809826913919No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6360.14993564083341585No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6210.14639942288923152No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6210.14639942288923152No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5980.1409772220414822No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5600.13201880324954854No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5370.12659660240179924No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5240.12353188018350615No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5050.11905267078753932No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4960.11693094002102872No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4700.11080149558444254No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4430.10443630328491073No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4270.10066433747778078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)