FastQCFastQC Report
Wed 8 May 2024
EGAF00007959913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424182
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38490.9073935244777006No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15770.37177437986524653No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14860.3503213243371949No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13790.3250963030020133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13730.3236818158243396No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13460.3173166235248077No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12410.2925630979155174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11310.2666308329914989No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8980.2117015809251689No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8340.19661371769664907No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8310.1959064741078122No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8170.1926060040265735No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7150.16855972200612002No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6580.15512209381821954No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6410.15111438014814396No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6300.14852115365574212No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6160.14522068357450338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5890.13885549127497157No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5790.13649801264551537No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.1294255767571467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5180.12211739300583241No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5050.11905267078753932No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4610.10867976481793193No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4550.10726527764025819No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4370.10302181610723699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)