FastQCFastQC Report
Wed 8 May 2024
EGAF00007959915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447642
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACCATCTGGGAATCCGCTGCCGATATCG30700.6858158975252546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26670.5957885989250339No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA20140.4499131002006067No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20090.4487961361981226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15640.3493863399770352No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12350.2758901086135796No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12180.2720924310051336No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10730.23970047493309388No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10630.2374665469281256No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10620.23724315412762875No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9900.22115887249185734No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.20060673484614938No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8530.19055405882379223No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8260.18452245321037794No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8050.1798312043999446No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7740.172906027584543No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7460.1666510291706319No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG7100.15860888835274617No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6930.15481121074430013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6880.153694246741816No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6850.15302406834032553No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6680.1492263907318795No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6430.14364157071945885No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6340.14163103551498743No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6320.14118424991399375No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6320.14118424991399375No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6060.1353760371010763No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5990.13381228749759852No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5880.13135496669213342No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.12711050348269376No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5690.12711050348269376No Hit
AGCATGCCGGGCACCTCTTCTCGCGTCGTTG5610.12532336107871916No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5600.12509996827822234No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5590.1248765754777255No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5470.1221958618717636No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4800.10722854423847628No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4780.10678175863748263No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4630.10343086663003026No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4630.10343086663003026No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC4600.10276068822853976No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4580.10231390262754611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)