FastQCFastQC Report
Wed 8 May 2024
EGAF00007959917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421671
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40860.9690018995852216No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG27650.6557244866258292No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24390.578413028166509No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19290.4574656545031553No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA17560.41643840814284117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14090.33414676370914764No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12570.29809970332320695No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10970.2601554292327431No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10250.24308050589203434No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9840.23335728565635291No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9700.23003716167343735No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8920.2115393280543362No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8080.19161858415684266No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7650.18142106049503048No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7470.1771523296598533No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7330.1738322056769377No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6960.16505759229351794No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6900.16363468201512554No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6460.15320000664024797No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6190.1467969103874822No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6130.14537400010908977No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG6090.14442539325682818No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6050.1434767864045666No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5820.1380222970040624No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5770.13683653843873542No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5660.13422786959501604No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5470.12972198704677343No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5380.12758762162918483No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5360.12711331820305405No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5280.12521610449853082No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5260.12474180107240004No Hit
AGCATGCCGGGCACCTCTTCTCGCGTCGTTG5120.12142167708948447No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5110.12118452537641906No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4740.11240991199299927No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC4680.11098700171460689No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4630.1098012431492799No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4610.1093269397231491No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4490.1064811191663643No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4400.1043467537487757No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4240.1005523263397293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)