FastQCFastQC Report
Wed 8 May 2024
EGAF00007959918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452507
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA32340.7146850766949461No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26860.593581977737361No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21630.4780036551920744No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14660.32397288881718955No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12940.28596242710057523No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11770.2601064734910178No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10110.22342195811335513No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9490.20972051261085464No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8930.1973450134473058No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8160.18032870209742613No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7620.16839518504686116No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6750.14916896313206204No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6670.1474010346801265No Hit
AGTGGTGTGACCCAGGCTTACAACGGAGCCGGTATCGGAAGAAT6550.1447491420022232No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6530.14430715988923928No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6530.14430715988923928No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG6460.14276022249379566No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG6350.1403293208723843No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6230.13767742819448095No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6170.1363514818555293No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6020.13303661600815017No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5860.12950075910427905No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5860.12950075910427905No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5800.12817481276532738No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5680.12552292008742408No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5640.12463895586145629No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5230.11557832254528659No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5220.11535733148879464No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5000.11049552824597189No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG4950.10939057296351216No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4730.1045287697206894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4720.10430777866419745No Hit
ACGGATGATGGTGGAGGCTTCGAAACGCACTGCTTCAACATCCG4560.10077192176032636No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4550.1005509307038344No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4530.10010894859085052No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4530.10010894859085052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)