FastQCFastQC Report
Wed 8 May 2024
EGAF00007959919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452507
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACCATCTGGGAATCCGCTGCCGATATCG32170.7109282287345831No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26320.581648460686796No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21020.4645232007460658No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15160.33502244164178674No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13800.30496765795888237No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA12690.28043765068827664No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12110.2676201694117439No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11200.247509983270977No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9970.22032808332246795No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9930.21944411909650016No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9760.21568727113613712No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8890.19646104922133803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8430.18629546062270858No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7820.17281500617670004No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7760.17148905983774837No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7440.16441734603000616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7400.1635333818040384No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7310.1615444622956109No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7210.15933455173069147No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6880.15204184686645733No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG6840.15115788264048954No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6540.14452815094573124No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6470.14298121355028762No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6390.14121328509835207No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6300.13922436558992457No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6260.13834040136395678No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6080.1343625623471018No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6010.13281562495165822No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5960.13171066966919848No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5750.12706985748286767No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.12463895586145629No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5530.1222080542400449No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5480.1211030989575852No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5300.1171252599407302No Hit
AGCATGCCGGGCACCTCTTCTCGCGTCGTTG5190.1146943583193188No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5140.1135894030368591No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4880.10784363556806856No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4670.10320282338173775No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4640.10253985021226192No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4600.10165588598629413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)