FastQCFastQC Report
Wed 8 May 2024
EGAF00007959921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428739
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37590.8767571879395155No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG29110.6789678569012849No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24790.5782072542969032No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19550.4559883752119588No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA17690.4126053379795167No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14340.3344692225339892No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12620.29435157520076316No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11200.2612311919372859No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10910.2544671700031954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9780.22811080867380853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9620.2243789345032759No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9210.21481600694128597No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7780.18146238154215036No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7500.1749316017437182No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7420.17306566465845186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.15837141011197955No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6750.1574384415693464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.1546395359414469No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6560.15300684099183887No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6320.1474090297360399No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6100.14227770275155746No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6090.14204446061589918No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG6060.14134473420892432No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6010.14017852353063284No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5990.13971203925931627No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5880.13714637576707506No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5830.1359801650887836No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5760.13434747013917558No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5610.13084883810430123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5550.1294493852903515No Hit
AGCATGCCGGGCACCTCTTCTCGCGTCGTTG5420.1264172375267937No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5110.11918673132138666No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5010.11685430996480377No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4920.11475513074387914No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4710.10985704589505504No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC4560.10635841386018068No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4460.10402599250359777No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4320.10076060260438169No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4320.10076060260438169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)