FastQCFastQC Report
Wed 8 May 2024
EGAF00007959931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453721
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33550.7394411984457409No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28890.6367349097793579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16030.35330081702191435No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14750.325089647602822No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9080.20012298306668636No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8320.18337260122410026No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8110.17874420624128043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6470.14259864542306835No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5010.11042028030441614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4700.10358788771072973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)