FastQCFastQC Report
Wed 8 May 2024
EGAF00007959933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427763
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40390.9442144364987155No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30950.7235314882306324No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26730.6248787295768918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14620.34177804064400147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13330.3116211547048249No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7260.16972014877397065No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7210.16855127722594054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5800.1355890995714917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)