FastQCFastQC Report
Wed 8 May 2024
EGAF00007959935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458418
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34020.742117456120833No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26940.5876732589034461No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15820.3450998870026919No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14770.322195027245876No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9070.19785435999459008No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8220.17931233066764393No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8160.17800348153868303No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6240.1361203094119341No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4840.10558049640284632No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4690.10230837358044405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)