FastQCFastQC Report
Wed 8 May 2024
EGAF00007959937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431876
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37950.8787244486843445No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31650.7328492437644138No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26660.6173068195500561No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14820.34315405347831324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13840.32046235493521286No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7640.17690262945845567No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7420.17180857468347396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6020.1393918624790449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)