FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450499
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18680.4146513088819287No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10010.22219805149400998No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9960.221088171116917No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9800.21753655391021953No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8720.1935631377650117No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8720.1935631377650117No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8370.185793975125361No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7540.16736996086561792No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6480.14384049687124723No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6150.1365152863824337No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6090.13518342992992216No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6090.13518342992992216No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5610.12452857830982976No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5400.11986708072603935No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5220.11587151136850471No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4970.11032210948303992No Hit
CATGACGGTACGAATAGACATACGGCGCATTTCATCGAAACGTT4950.10987815733220273No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4840.10743642050259823No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4790.10632654012550527No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4710.10455073152215655No Hit

[OK]Adapter Content

Adapter graph