FastQCFastQC Report
Wed 8 May 2024
EGAF00007959939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450499
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18500.41065573952439405No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11250.24972308484591532No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10390.23063314235991644No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10310.22885733375656772No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9840.2184244582118939No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9440.20954541519515027No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8750.19422906599126746No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8270.18357421437117508No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7340.16293043935724608No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.14805804230420044No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6600.1465042097762703No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6480.14384049687124723No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6300.13984492751371258No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6160.13673726245785228No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6080.13496145385450356No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6000.13318564525115484No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.128746123742783No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5750.12763624336569004No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5690.1263043869131785No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5410.12008905680145794No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5320.11809127212269062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5090.112985822388063No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4780.10610456405008668No Hit
GACGGTATTTCCTCCGGCGGCGGTACTCCGC4770.10588258797466808No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4670.10366282722048217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)