FastQCFastQC Report
Wed 8 May 2024
EGAF00007959940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428998
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17590.41002522156280446No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10100.23543233301786953No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9140.21305460631518094No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8820.20559536408095141No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8640.2013995403241973No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8560.19953472976563993No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8540.1990685271260006No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7500.17482598986475462No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6800.15850889747737754No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5790.13496566417559056No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5690.13263465097739383No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5580.13007053645937744No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5240.12214509158550856No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4820.11235483615308228No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4800.11188863351344294No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4750.11072312691434458No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4740.11049002559452492No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4740.11049002559452492No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4630.10792591107650852No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4550.10606110051795113No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4490.1046624925990331No Hit
CATGACGGTACGAATAGACATACGGCGCATTTCATCGAAACGTT4480.10442939127921341No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4430.10326388468011508No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4390.10233147940083637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)