FastQCFastQC Report
Wed 8 May 2024
EGAF00007959941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428998
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40800.951053384864265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17270.40256597932857496No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11170.26037417423857456No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10120.2358985356575089No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9910.23100340794129579No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8730.20349745220257434No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8640.2013995403241973No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7710.17972111758096776No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7270.16946465950890213No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6730.1568771882386398No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6080.14172560245036106No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5860.1365973734143283No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.13613117077468895No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5600.13053673909901678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5570.12983743513955778No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5560.1296043338197381No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5390.12564161138280364No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5310.12377680082424627No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5240.12214509158550856No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5160.12028028102695118No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5090.11864857178821347No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4790.11165553219362329No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4780.1114224308738036No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4720.11002382295488558No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4600.1072266071170495No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4330.10093287148191833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)