FastQCFastQC Report
Wed 8 May 2024
EGAF00007959942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457592
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17720.38724453224706723No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10430.22793230650885507No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10040.21940943023479434No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9780.21372751271875384No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9440.2062973128900855No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8930.195152013147083No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8470.18509938984947288No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7840.17133166663752863No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7180.15690833755834893No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6410.14008112029930592No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6400.13986258501022744No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5990.13090263815800976No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5980.13068410286893128No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5210.1138568856098883No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5210.1138568856098883No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5100.111452997430025No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4940.1079564328047693No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4930.10773789751569082No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4920.10751936222661235No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4910.10730082693753387No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4720.10314865644504274No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4680.10227451528872882No Hit
CATGACGGTACGAATAGACATACGGCGCATTTCATCGAAACGTT4670.10205597999965034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)