FastQCFastQC Report
Wed 8 May 2024
EGAF00007959943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457592
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18020.3938005909194217No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11830.2585272469798423No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11050.24148149443172082No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10920.23864053567370058No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10360.2264025594853057No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9460.20673438346824244No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8710.19034423678735643No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8060.1761394429972552No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7860.17176873721568559No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7170.15668980226927046No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6590.14401475550271858No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6460.14117379674469832No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6440.14073672616654137No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6420.1402996555883844No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6400.13986258501022744No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6060.13243238518155911No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6040.13199531460340214No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5780.12631339708736167No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5730.12522072064196926No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5630.12303536775118445No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5540.12106855014947815No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5340.11669784436790853No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5310.11604223850067308No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5160.1127642091644959No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5050.1103603209846326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)