FastQCFastQC Report
Wed 8 May 2024
EGAF00007959944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434505
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17230.3965431928286211No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9350.21518739715308222No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9160.21081460512537256No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9040.20805284173945066No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8850.20368004971174095No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8510.19585505345162887No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8170.1880300571915168No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7340.16892786043889021No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6580.15143669232805146No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5900.1357866998078273No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5790.13325508337073222No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5590.1286521443941957No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5240.12059700118525678No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5080.11691465000402756No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4820.1109308293345301No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4740.1090896537439155No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4700.10816906594860817No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4590.1056374495115131No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4480.10310583307441802No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4460.10264553917676436No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4440.10218524527911071No Hit
CATGACGGTACGAATAGACATACGGCGCATTTCATCGAAACGTT4430.10195509833028388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)