FastQCFastQC Report
Wed 8 May 2024
EGAF00007959945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434505
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38080.8763995811325531No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16930.3896387843638163No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11250.25891531743017915No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9750.22439327510615528No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9710.223472687310848No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG9610.22117121782257973No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8230.18941093888447774No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7970.18342711821498026No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7340.16892786043889021No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6610.15212713317453194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6390.14706390030034178No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6160.14177052047732477No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6120.14084993268201748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6090.140159491835537No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5760.13256464252425174No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5530.12727126270123476No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5340.12289847067352504No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5200.11967641338994948No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5060.11645435610637392No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5030.11576391525989344No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5010.11530362136223979No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4950.11392273966927882No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4900.11277200492514472No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4510.10379627392089849No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4480.10310583307441802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)