FastQCFastQC Report
Wed 8 May 2024
EGAF00007959949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427855
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40880.9554638837924062No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9100.21268887824146032No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9040.2112865339893188No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7910.18487571724065396No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7820.1827722008624417No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5000.11686202101179137No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4680.10938285166703673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)