FastQCFastQC Report
Wed 8 May 2024
EGAF00007959951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455961
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC9790.21471134592651564No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9110.19979778972324386No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8700.19080579260068295No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8600.18861262257079003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8550.1875160375558436No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5150.11294825653948473No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4760.10439489342290241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)