FastQCFastQC Report
Wed 8 May 2024
EGAF00007959953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433450
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38630.8912215941861806No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8930.20602145576191028No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8720.2011766062983043No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8180.18871842196331756No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8130.18756488637674473No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.12089052947283424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4420.10197254585303957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)