FastQCFastQC Report
Wed 8 May 2024
EGAF00007959955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434177
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27530.6340732005610615No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23520.5417145542025487No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.2851371675606953No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11110.2558864242002685No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10460.24091557129926272No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10460.24091557129926272No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10180.23446658851113714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10050.231472417930936No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9030.20797969491704996No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6010.13842280913083835No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.13704088424766858No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5540.12759773087934184No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4510.10387468705159415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)