FastQCFastQC Report
Wed 8 May 2024
EGAF00007959957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410428
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39240.956075121580399No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25270.6156987340045026No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22610.550888340951397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10740.26167805315426823No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10250.24973929653922247No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9710.23658229945325368No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9620.23438946660559223No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9560.23292757804048458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9240.2251308390265771No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5920.14423967175728752No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5670.13814846940267234No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5210.1269406570701804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)