FastQCFastQC Report
Wed 8 May 2024
EGAF00007959959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438446
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26800.6112497320080467No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23890.5448789588683669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.29102785747845805No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11660.26593924907514266No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10890.24837722319282193No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10880.24814914493460996No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10790.24609644061070235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10430.23788562331507188No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8330.18998918909056076No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6280.14323314615710944No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5720.1304607636972398No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5660.12909229414796805No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4680.1067406248431962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)