FastQCFastQC Report
Wed 8 May 2024
EGAF00007959961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415866
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36760.8839385763683495No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25420.6112545868140218No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22810.5484939860435813No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11490.2762909206330886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10500.25248517551326627No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10470.2517637892975141No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10110.24310715470848782No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9590.2306031269687832No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9240.22218695445167433No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6030.14499862936619007No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5800.13946800171208995No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5280.12696397397238532No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4440.10676515993132403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)