FastQCFastQC Report
Wed 8 May 2024
EGAF00007959970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457397
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14160.3095778940395324No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12710.2778767678843543No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11270.2463942701854188No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10250.2240941676486728No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9870.21578628631145372No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9820.2146931440302407No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9030.19742149598707467No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9030.19742149598707467No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6890.15063500635115665No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6220.13598689978290196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5810.12702313307695504No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5580.12199467858337505No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5400.11805936637100813No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4770.10428577362772383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)