FastQCFastQC Report
Wed 8 May 2024
EGAF00007959971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457397
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19690.4304794303416944No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12480.2728483133907743No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11370.24858055474784485No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10940.23917953112941276No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10350.22628045221109888No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10070.2201588554363059No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10030.21928434161133545No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9650.21097646027411635No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.20135680819944163No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8600.18802047236864255No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7280.15916151614461835No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6710.14669969413878972No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.14495066648884886No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6010.13139570220180719No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5760.125929990795742No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5040.11018874194627425No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4860.1062534297339073No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4630.10122497524032734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)