FastQCFastQC Report
Wed 8 May 2024
EGAF00007959972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432106
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13430.31080336769218664No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12470.2885865968072649No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10180.23559034125885778No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10170.23535891656213986No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9670.2237876817262431No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8900.20596798007896214No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8530.1974052663003985No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8410.1946281699397833No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6860.15875734194850338No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5700.13191207712922293No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5270.12196081517035172No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5250.12149796577691585No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4940.11432380017865987No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4500.10414111352307072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)